Complete Infectious Disease Bootcamp Syllabus — a 35-module systematic review covering every organism on the blueprint, followed by 14 trap-focused clinical topics with pre-read vignettes. Now expanded with Module D: Must-Know Differentials (5 high-yield diagnostic frameworks) and Module E: Board Pearls (domain-organized clinical decision points). Board questions available in the companion document.
| Stage | Timing | Key Features |
|---|---|---|
| Primary | 10–90 days | Painless chancre — clean base, raised indurated border — at the inoculation site; painless regional lymphadenopathy |
| Secondary | 4–10 weeks | Diffuse maculopapular rash including palms and soles; condylomata lata (moist, flat, gray-white); mucous patches; generalized lymphadenopathy; constitutional symptoms |
| Early latent | < 1 year | Positive serology, no clinical findings |
| Late latent | > 1 year | Positive serology, no clinical findings, or duration unknown |
| Tertiary | Years–decades | Gummas; cardiovascular syphilis (aortitis, ascending aortic aneurysm); neurosyphilis |
Neurosyphilis is NOT confined to tertiary disease — it can occur at any stage, including primary.
| Marker | Interpretation |
|---|---|
| HBsAg | Active infection — acute or chronic |
| Anti-HBs | Immunity — from vaccine or from recovery |
| Anti-HBc IgM | Acute infection — the only marker positive in the window period |
| Anti-HBc IgG | Past or chronic infection — never produced by vaccination |
| HBeAg | High replication and high infectivity |
| Anti-HBe | Lower replication and lower infectivity |
| HBV DNA | Quantitative viral load — guides treatment |
Window period: HBsAg negative, anti-HBs negative, anti-HBc IgM POSITIVE. Vaccinated: anti-HBs only. Recovered: anti-HBs plus anti-HBc IgG.
| Feature | Ehrlichiosis | Anaplasmosis |
|---|---|---|
| Organism | Ehrlichia chaffeensis | Anaplasma phagocytophilum |
| Vector | Lone Star tick (Amblyomma americanum) | Ixodes scapularis — the same tick as Lyme |
| Region | Southeastern, south-central, mid-Atlantic | Northeastern and upper Midwest |
| Target cell | Monocytes | Granulocytes / neutrophils |
| Rash | Up to 30%, more common in children | Rare |
| Co-infection | Uncommon | Lyme and babesiosis — shared Ixodes vector |
| Treatment | Doxycycline 100 mg PO BID | Doxycycline 100 mg PO BID |
| Feature | Cerebral Toxoplasmosis | Primary CNS Lymphoma |
|---|---|---|
| Number | Multiple | Single |
| Location | Basal ganglia, corticomedullary junction | Periventricular |
| Serology / CSF | Toxoplasma IgG positive | CSF EBV DNA positive |
| Empiric therapy | Responds within 2 weeks | No response → proceed to biopsy |
| CD4 | < 100 | < 50 |
Invasive candidiasis alongside the moulds and endemic mycoses, with the imaging sign, antigen test, and first-line antifungal for each. Invasive aspergillosis appears only here — it is the one invasive fungal infection without its own module.
| Organism | Epidemiology | Classic Presentation | Dx | Treatment |
|---|---|---|---|---|
| Candida (mucosal) | Antibiotics, corticosteroids, DM, dentures, immunocompromised | Oral thrush: white plaques (scrape off → raw surface). Esophageal: odynophagia + dysphagia. | Clinical (oral); EGD (esophageal) | Oral: nystatin. Esophageal: fluconazole × 14–21d. |
| Invasive Candidiasis | ICU, TPN, broad-spectrum ABx, central venous catheter, abdominal surgery | Fever unresponsive to antibiotics in ICU. Can cause endophthalmitis. | Blood cultures (50% sensitive). β-D-glucan. Fundoscopic exam mandatory in ALL candidemic patients. | Echinocandin FIRST-LINE (caspofungin, micafungin). Fluconazole if stable + susceptible. Remove CVC. |
| Coccidioidomycosis | Southwest US (AZ, CA, TX). Soil/dust exposure. | Primary "Valley Fever": flu-like + cough + erythema nodosum/multiforme. Disseminated (immunocompromised): meningitis, bone/joint. | Serology (IgM early, IgG late). Sputum culture. | Mild: fluconazole. Severe: amphotericin B → fluconazole. Meningitis: LIFELONG fluconazole (100% relapse if stopped). |
| Histoplasmosis | Ohio/Mississippi river valleys; bird/bat droppings; caves. CD4 <150 = prophylaxis with itraconazole. | Mimics TB. Progressive disseminated (immunocompromised): fever, weight loss, hepatosplenomegaly, oral ulcers, pancytopenia. | Urine histoplasma antigen (BEST for acute disseminated). Serology. | Mild: itraconazole. Moderate-severe: amphotericin B → itraconazole. |
📚 Invasive aspergillosis and ABPA are taught in the Pulmonary syllabus — see Pulmonary Module 18 — Pulmonary Fungal Infections for the halo sign, galactomannan, and voriconazole.
📚 Tuberculosis is now taught in full in the Pulmonary syllabus. The organism, TST and IGRA cutoffs, latent-versus-active decision-making, RIPE therapy, drug toxicities, extrapulmonary forms, and public health reporting are all worked in Pulmonary Module 8 — Tuberculosis. This module keeps only what is specific to the patient with HIV.
📚 The chronic cavitary pulmonary form of histoplasmosis is taught in Pulmonary Module 18 — Pulmonary Fungal Infections. This module covers it as an opportunistic infection, anchored to the CD4 threshold.
📚 The pulmonary presentation of coccidioidomycosis is taught in Pulmonary Module 18 — Pulmonary Fungal Infections. This module covers it as an opportunistic infection, anchored to the CD4 threshold.
Nearly every genital ulcer question resolves on two variables: is the ulcer painful, and are the nodes painful? Learn the pairing first, then the exceptions. Syphilis is painless-painless. Chancroid is painful-painful. LGV breaks the pattern with a painless ulcer and painful buboes.
| Disease | Pathogen | Ulcer | Pain | Lymphadenopathy | Diagnosis | Treatment |
|---|---|---|---|---|---|---|
| Syphilis (primary) | T. pallidum | Clean base, indurated border | Painless | Painless, bilateral | Darkfield; RPR/VDRL then FTA-ABS | Benzathine penicillin G IM |
| Herpes | HSV-1, HSV-2 | Grouped vesicles → shallow ulcers | Painful | Painful, bilateral | PCR of vesicle fluid | Valacyclovir or acyclovir |
| Chancroid | H. ducreyi | Ragged, undermined edges | Painful | Painful, unilateral buboes | Clinical; culture on special media | Azithromycin or ceftriaxone |
| LGV | C. trachomatis L1–L3 | Small, transient papule or ulcer | Painless | Painful, unilateral buboes | Serology; NAAT | Doxycycline × 21 days |
| Granuloma inguinale | K. granulomatis | Beefy-red, highly vascular | Painless | Pseudobuboes — not true nodes | Donovan bodies on biopsy | Azithromycin × 3+ weeks |
| STI | First-Line Treatment | Key Change / Board Trap |
|---|---|---|
| Chlamydia | Doxycycline 100mg BID × 7 days | Doxy NOW PREFERRED over azithromycin — better efficacy, especially rectal chlamydia |
| Gonorrhea | Ceftriaxone 500mg IM × 1 (1g if ≥150kg) | Azithromycin co-treatment NO LONGER recommended — ceftriaxone MONOTHERAPY |
| Syphilis — Primary/Secondary/Early Latent | Benzathine penicillin G 2.4 MU IM × 1 | Penicillin ONLY in pregnancy — if allergic, desensitize |
| Syphilis — Late Latent/Unknown Duration | Benzathine penicillin G 2.4 MU IM weekly × 3 (total 7.2 MU) | 3 weekly doses |
| Neurosyphilis | IV aqueous crystalline penicillin G × 10–14 days | Can occur at ANY stage — evaluate for ocular/otic/neuro symptoms in all syphilis |
| PID | Ceftriaxone 500mg IM + doxycycline × 14d + metronidazole × 14d | Metro NOW routinely added for anaerobic coverage (2021 update) |
| Trichomoniasis | Women: Metro 500mg BID × 7d | Men: 2g × 1 | 7-day course preferred for women |
| Genital herpes (1st episode) | Acyclovir 400mg TID × 7–10d | Valacyclovir 1g BID is an alternative |
Gonorrhea vs chlamydia vs non-gonococcal urethritis vs trichomoniasis — presentation, diagnosis, CDC 2021 treatment, and partner management side by side.
| Organism | Presentation | Diagnosis | Treatment (CDC 2021) | Board Key |
|---|---|---|---|---|
| Neisseria gonorrhoeae | Purulent urethral/cervical discharge, dysuria. Men: purulent green/yellow discharge. Women: often asymptomatic. | NAAT (most sensitive). Gram stain: intracellular diplococci. | Ceftriaxone 500mg IM × 1 (1g if ≥150kg). MONOTHERAPY — no azithromycin added. | No fluoroquinolones (widespread resistance). Always test + treat for chlamydia co-infection if not excluded by NAAT. |
| Chlamydia trachomatis | Often asymptomatic (#1 reported STI in US). Mucopurulent discharge, dysuria, cervicitis, PID. | NAAT. | Doxycycline 100mg BID × 7 days (preferred over azithromycin — lower recurrence rate per 2021 update). | Doxycycline now preferred over azithromycin for chlamydia. Major CDC 2021 update boards test directly. |
| Non-gonococcal urethritis (NGU) | Mild discharge, dysuria, usually less purulent than GC | NAAT negative for GC/chlamydia. May be Mycoplasma genitalium, Ureaplasma. | Doxycycline 100mg BID × 7 days. | If recurrent/persistent NGU: test for Mycoplasma genitalium → treat with moxifloxacin if positive. |
| Trichomonas vaginalis | Women: frothy yellow-green vaginal discharge + "strawberry cervix" + pruritus. Men: often asymptomatic. | NAAT or wet prep (motile trichomonads). | Metronidazole 2g PO × 1 (or 500mg BID × 7d for recurrent). Treat BOTH partners simultaneously. | Concurrent treatment of sex partner is mandatory — very high re-infection rate without partner treatment. |
| Bacterial Vaginosis (BV) | Thin gray-white discharge + fishy odor (worse after sex). Clue cells on wet prep. Whiff test positive. | Amsel criteria (3 of 4) or Nugent score. | Metronidazole 500mg BID × 7 days OR vaginal metronidazole gel × 5 days. | BV is NOT an STI — it's a disruption of normal flora. Male partner treatment does NOT reduce recurrence (unlike trichomonas). |
HIV questions on the PANCE are frequently CD4-anchored: the stem gives a count and a syndrome, and the answer follows from the threshold. Learn the descending ladder as a single sequence rather than as isolated facts.
| CD4 (cells/mm³) | Infections and Malignancies That Become Likely | Prophylaxis |
|---|---|---|
| < 500 | Kaposi sarcoma, oral hairy leukoplakia, recurrent bacterial pneumonia, tuberculosis reactivation | ART — started at any CD4 |
| < 200 | PCP, coccidioidomycosis | TMP-SMX DS daily |
| < 150 | Disseminated histoplasmosis | Itraconazole, endemic areas only |
| < 100 | Cerebral toxoplasmosis, cryptococcosis | TMP-SMX (only if Toxoplasma IgG positive); no routine cryptococcal prophylaxis |
| < 50 | MAC, CMV retinitis, PML, primary CNS lymphoma | None routinely if ART starts promptly |
Discontinue PCP and Toxoplasma prophylaxis when CD4 stays above 200 for at least 3 months on ART.
| Disease | Pathogen | Vector | Region | Key Finding | Rash | Treatment |
|---|---|---|---|---|---|---|
| Lyme | B. burgdorferi | Ixodes scapularis | Northeast, upper Midwest | Erythema migrans | Bull's-eye | Doxycycline |
| RMSF | R. rickettsii | Dermacentor | Southeast, south-central | Vasculitis; hyponatremia | Wrists/ankles → trunk | Doxycycline |
| Ehrlichiosis | E. chaffeensis | Lone Star tick | Southeast, south-central | Morulae in monocytes | Up to 30% | Doxycycline |
| Anaplasmosis | A. phagocytophilum | Ixodes scapularis | Northeast, upper Midwest | Morulae in granulocytes | Rare | Doxycycline |
| Babesiosis | B. microti | Ixodes scapularis | Northeast, upper Midwest | Maltese cross; hemolysis | None | Atovaquone + azithromycin |
| Tularemia | F. tularensis | Dermacentor; rabbits | Widespread | Ulceroglandular | Variable | Streptomycin or gentamicin |
| Feature | Bacterial Vaginosis | Vulvovaginal Candidiasis | Trichomoniasis |
|---|---|---|---|
| Discharge | Thin, gray-white, homogeneous | Thick, white, cottage-cheese | Frothy, yellow-green |
| Odor | Fishy — whiff test positive | None | Malodorous |
| pH | > 4.5 | < 4.5 — normal | > 4.5 |
| Wet mount | Clue cells | KOH: pseudohyphae and budding yeast | Motile trichomonads |
| Inflammation | Minimal — no vulvar irritation | Prominent pruritus and erythema | Variable; strawberry cervix |
| Treatment | Metronidazole | Fluconazole or topical azole | Metronidazole |
| Treat partner? | No | No | Yes |
| Pathogen | Endoscopic Appearance | Diagnosis | Treatment |
|---|---|---|---|
| Candida | White plaques and pseudomembranes | Clinical in HIV; endoscopy only if refractory | Fluconazole |
| CMV | Large, shallow, linear ulcers | Biopsy: owl's eye inclusions | Ganciclovir or valganciclovir |
| HSV | Small, deep, well-circumscribed ulcers | Biopsy: Cowdry type A inclusions, multinucleated giant cells | Acyclovir or valacyclovir |
| Aphthous (idiopathic) | Large, deep ulcers of the mid-to-distal esophagus | Diagnosis of exclusion | Corticosteroids; thalidomide |
| Vaccine | Who and When | Board Key |
|---|---|---|
| HPV (Gardasil 9) | Routine at 11–12 (may start at 9); catch-up through 26; shared decision 27–45 | 2 doses if started before 15; 3 doses if 15 or older or immunocompromised |
| Hepatitis B | Universal infant series; all unvaccinated adults through 59; age 60+ with risk factors | 3-dose series, or 2-dose Heplisav-B |
| Hepatitis A | 2-dose series — MSM, people who inject drugs, chronic liver disease, travel to endemic areas | Also given for post-exposure prophylaxis |
| Zoster (Shingrix) | 2 doses at age 50 and above; immunocompromised adults 19 and above | Recombinant, not live — safe in immunocompromised patients. Efficacy above 90% |
| Meningococcal | MenACWY at 11–12 with a booster at 16; MenB at 16–23 by shared decision or in outbreaks | Asplenia, complement deficiency, and college dormitories raise priority |
| Mpox (JYNNEOS) | At-risk populations including MSM and persons with HIV | Non-replicating; safe in immunocompromised patients |
The 2025 IDSA guidelines changed how UTI is classified. Diabetes, immunocompromise, and benign prostatic hyperplasia alone do NOT make a UTI "complicated" if the infection appears confined to the bladder — both men and women can now have uncomplicated UTI.
🚨 Classic Trap: A diabetic woman with isolated dysuria and no systemic signs has UNCOMPLICATED cystitis under the 2025 reclassification — don't reflexively label her "complicated" based on her diabetes alone.
| Organism | Frequency | Key Notes |
|---|---|---|
| E. coli | 75–90% | Most common cause of both uncomplicated and complicated UTI |
| Klebsiella pneumoniae | 6–8% | Second most common Gram-negative |
| S. saprophyticus | 5–6% | #2 cause in young sexually active women — classic board question |
| Proteus mirabilis | 2–5% | Urease-producing → alkaline urine → struvite (staghorn) stones |
| Enterococcus | ~5% | Intrinsically resistant to cephalosporins |
| Pseudomonas | <5% | More common in catheterized/healthcare-associated UTI |
🩺 PANCE Pearl: S. saprophyticus is coagulase-negative and novobiocin-RESISTANT — this distinguishes it from S. epidermidis, which is novobiocin-sensitive. A classic board differentiator.
| Cystitis | Pyelonephritis | |
|---|---|---|
| Symptoms | Dysuria, frequency, urgency, suprapubic pain. NO fever. | Cystitis symptoms + fever, rigors, CVA tenderness, N/V |
| Culture required? | NOT mandatory in non-pregnant women with typical symptoms | ALWAYS obtain — confirmatory test is ≥10,000 CFU/mL of a uropathogen |
| First-line Rx | Nitrofurantoin, TMP-SMX, fosfomycin, or pivmecillinam | Fluoroquinolone (outpatient) or IV ceftriaxone/cefepime/pip-tazo (inpatient) |
| Nitrofurantoin OK? | YES — high urine concentration | NO — inadequate renal tissue levels |
🩺 PANCE Pearl: Urine culture is recommended for recurrent UTI, treatment failure, atypical presentation, men, and age ≥65 — even in suspected cystitis.
🚨 Classic Trap: Sterile pyuria differential — TB of the urinary tract, interstitial nephritis, nephrolithiasis, urethritis (Chlamydia), recently treated UTI, bladder cancer. Don't assume "no growth + WBCs" means lab error.
Uncomplicated pyelonephritis responding to therapy does NOT need imaging. Order CT abdomen/pelvis only for:
CT with contrast detects abscess/gas; CT without contrast detects stones; ultrasound is preferred in pregnancy and is more sensitive for hydronephrosis.
🚨 Classic Trap: Do NOT order imaging for uncomplicated pyelonephritis that is improving on therapy — this is a frequently tested unnecessary-testing trap.
| Agent | Dose | Duration | Key Notes |
|---|---|---|---|
| Nitrofurantoin | 100mg BID | 5 days | Take with food; avoid if CrCl <30 (label says <60); NEVER for pyelonephritis |
| TMP-SMX | 160/800mg BID | 3 days | Only if local resistance <20%; avoid if recent use |
| Fosfomycin | 3g | 1 dose | Convenient but may be less effective than multi-day regimens |
| Pivmecillinam | 400mg TID | 3 days | Recently FDA-approved in the US for uncomplicated UTI in women |
🚨 Classic Trap: Do NOT use amoxicillin or ampicillin empirically — E. coli resistance rates exceed 40%. Fluoroquinolones are NOT first-line for uncomplicated cystitis (reserved for pyelonephritis/invasive infection).
🚨 Classic Trap: TMP-SMX should NOT be used empirically for pyelonephritis — resistance rates approach 20% in many US regions. Use only after susceptibility is confirmed.
| Syndrome | Duration |
|---|---|
| Uncomplicated cystitis (women) | 3–5 days (agent-dependent) |
| Uncomplicated cystitis (men) | 7 days |
| Pyelonephritis (fluoroquinolone) | 5–7 days |
| Pyelonephritis (non-fluoroquinolone) | 7 days |
| Gram-negative bacteremia, urinary source | 7 days if afebrile/stable/source controlled |
| CAUTI | 7 days (up to 10–14 if slow response) |
🩺 PANCE Pearl: Shorter courses (5–7 days) are as effective as longer courses (10–14 days) per meta-analysis — this is a major 2025 update. Men with complicated UTI may still benefit from 10–14 days given occult prostatitis risk.
🚨 Classic Trap: Treating ASB in the elderly does NOT reduce mortality, does NOT prevent symptomatic UTI, and INCREASES C. diff risk and antimicrobial resistance. Delirium alone in an elderly patient with bacteriuria should prompt evaluation for OTHER causes of delirium — not reflexive antibiotics.
Defined as ≥3 UTIs/year or ≥2 in 6 months. Evidence-based preventive measures:
🩺 PANCE Pearl: "Honeymoon cystitis" — UTI associated with intercourse — responds well to post-coital prophylaxis with a single dose of TMP-SMX or nitrofurantoin.
| CD4 Count (cells/mm³) | Opportunistic Infection | Prophylaxis | Board Key |
|---|---|---|---|
| < 200 | PCP (Pneumocystis jirovecii) | TMP-SMX DS daily — FIRST-LINE | The single most important OI prophylaxis drug |
| < 150 | Histoplasmosis | Itraconazole 200 mg daily | Endemic areas only — Ohio and Mississippi River valleys |
| < 100 | Toxoplasma (if IgG seropositive) | TMP-SMX DS daily — covers BOTH PCP and Toxoplasma | One drug, two OIs covered |
| < 100 | Cryptococcus (if serum CrAg+) | Fluconazole 200 mg daily | Screen with serum CrAg in high-prevalence settings |
| < 50 | MAC | None if ART is started promptly | Routine MAC prophylaxis is no longer recommended when ART begins immediately |
| Any count | Latent TB (LTBI) | 3HP or 4R preferred; 9H is the alternative — always add pyridoxine with INH | Screen every HIV patient with TST or IGRA at diagnosis |
| OI | CD4 (cells/mm³) | Classic Presentation | Key Dx | Treatment |
|---|---|---|---|---|
| PCP | < 200 | Bilateral diffuse GGO on CT; elevated LDH; hypoxia worsens with exertion; dry cough; CXR may be NORMAL early | Sputum or BAL silver stain/DFA | TMP-SMX high dose × 21d. Add prednisone if PaO₂ <70 or A-a gradient >35. |
| Toxoplasmosis | < 100 | Multiple ring-enhancing lesions on MRI; headache; focal deficits | MRI + toxo serology. Empiric treatment. | Pyrimethamine + sulfadiazine + leucovorin |
| Crypto meningitis | < 100 | Headache, fever, elevated opening pressure on LP; India ink positive | ALWAYS measure opening pressure. CrAg serum + CSF. | Amphotericin B + flucytosine (induction × 2wk) → fluconazole maintenance |
| CMV retinitis | < 50 | "Pizza pie" fundoscopy (hemorrhages + exudates). Vision loss. | Ophthalmologic exam | Valganciclovir PO or ganciclovir IV |
| MAC | < 50 | Fever, night sweats, weight loss, diarrhea, elevated alk phos | Mycobacterial blood cultures | Azithromycin + ethambutol |
| CNS Lymphoma | < 50 | SINGLE ring-enhancing lesion; EBV-associated | CSF EBV DNA; biopsy if no toxo response | Radiation ± chemo; poor prognosis |
Definite IE: 2 Major OR 1 Major + 3 Minor OR 5 Minor criteria
Major Criteria:
Minor Criteria:
🩺 PANCE Pearl: Osler nodes = painful (immune complex) · Janeway lesions = painless (septic emboli). "Osler HURTS, Janeway DOESN'T." Both are peripheral signs of IE.
| Organism | Classic Association | Board Key |
|---|---|---|
| S. aureus | IVDU (tricuspid), acute IE, prosthetic valves | #1 cause overall. IVDU → right-sided tricuspid valve. High mortality. |
| Viridans streptococci | Native valve subacute, dental procedures | Subacute course. Penicillin-susceptible. |
| S. bovis/gallolyticus | Colon lesions, elderly | MANDATORY colonoscopy — ~60% colorectal neoplasia association |
| Enterococcus | GI/GU procedures | Synergistic therapy: ampicillin + gentamicin OR ampicillin + ceftriaxone |
| HACEK organisms | Culture-negative IE (slow-growing gram-negatives) | Treat with ceftriaxone. Prolonged incubation needed for cultures. |
| S. epidermidis (CoNS) | Prosthetic valve <60 days | Early prosthetic (<60d) = CoNS. Late (>60d) = same as native valve. |
| Finding | Pain? | Mechanism | Location |
|---|---|---|---|
| Osler nodes | PAINFUL — "Ouch-sler" | Immune complex deposition | Finger/toe pulp |
| Janeway lesions | PAINLESS | Septic microemboli | Palms and soles |
| Roth spots | — | Retinal hemorrhages with white center | Fundoscopic exam |
| Splinter hemorrhages | — | Septic microemboli in nail capillaries | Subungual |
| Age Group | Key Organisms | Empiric Therapy | Board Key |
|---|---|---|---|
| Neonates (0–28d) | Group B Strep, E. coli, Listeria | Ampicillin + cefotaxime (or gentamicin) | GBS #1 neonates |
| Children/Adults (1mo–50yr) | S. pneumoniae (#1), N. meningitidis | Vancomycin + ceftriaxone | Vanco covers pen-resistant pneumococcus |
| Adults >50 / Immunocompromised / Pregnant | S. pneumoniae, N. meningitidis, Listeria | Vancomycin + ceftriaxone + AMPICILLIN | Cephalosporins have ZERO Listeria coverage — ampicillin is essential |
| Parameter | Bacterial | Viral (Aseptic) | Fungal/TB |
|---|---|---|---|
| Opening Pressure | Elevated (>20 cm H₂O) | Normal or mildly elevated | Elevated |
| WBC / Cell type | >1000, neutrophil predominant | 10–500, lymphocyte predominant | 10–500, lymphocyte |
| Glucose | LOW (<40 mg/dL) | Normal | LOW |
| Protein | HIGH (>250 mg/dL) | Normal/mildly elevated | HIGH |
Sepsis is the #1 cause of ICU mortality in the US. Boards test: Sepsis-3 definition (SOFA-based, NOT SIRS), vasopressor selection, the Hour-1 Bundle, and fluid strategy. Multiple questions per exam.
| Line | Agent | Notes | Board Key |
|---|---|---|---|
| First-line | Norepinephrine | Titrate to MAP ≥65 | NOT dopamine — higher arrhythmia risk with dopamine |
| Second-line | Vasopressin 0.03 units/min | Add when NE ≥0.25–0.5 mcg/kg/min | NE-sparing; fixed dose |
| Third-line | Epinephrine | Refractory shock | Can cause lactic acidosis (β2) |
| Adjunct | Hydrocortisone 200 mg/day CI | Vasopressor-refractory septic shock | Weak recommendation; improves shock reversal |
📚 Now taught in the Pulmonary syllabus. Community-acquired pneumonia is worked in full in Pulmonary Module 3, which owns this topic to avoid teaching it twice across the two syllabi.
| Episode/Severity | Definition | Treatment |
|---|---|---|
| Initial, Nonsevere | WBC ≤15K, Cr <1.5 | Vancomycin 125mg PO QID × 10d OR Fidaxomicin 200mg BID × 10d |
| Initial, Severe | WBC >15K or Cr ≥1.5 | Vancomycin 125mg PO QID × 10d OR Fidaxomicin 200mg BID × 10d |
| Fulminant | Hypotension, ileus, toxic megacolon | Vancomycin 500mg PO QID + Metronidazole 500mg IV TID ± Vancomycin per rectum (if ileus) |
| 1st Recurrence | — | Vancomycin taper/pulse OR Fidaxomicin (preferred — fewer recurrences) |
| 2nd+ Recurrence | — | FMT — >85% cure rate. FDA-approved: Rebyota (fecal), Vowst (oral spores) |
| Type | Organism | Treatment | Board Key |
|---|---|---|---|
| Mild nonpurulent cellulitis | β-hemolytic Streptococcus — groups A, B, C, G (NOT MRSA) | Oral cephalexin or dicloxacillin × 5 days. Go IV if systemic toxicity, rapid spread, or immunocompromised. | Routine MRSA coverage NOT needed |
| Moderate cellulitis | β-hemolytic Strep | IV cefazolin or ceftriaxone | Upgrade if 1–2 SIRS criteria |
| Severe cellulitis | Mixed, MRSA possible | Admit. IV vancomycin + pip-tazo. Surgical consult if necrotizing features. | SIRS + hypotension/sepsis |
| Purulent SSTI (abscess) | S. aureus — CA-MRSA is the presumed organism | I&D is PRIMARY treatment. Add TMP-SMX/doxy only if surrounding cellulitis or SIRS. | Antibiotics alone = insufficient |
| Erysipelas | Group A Strep | Penicillin VK or amoxicillin (IV PCN G if severe) | Sharply demarcated, raised, bright red borders |
| Drug | Route/Duration | Board Key |
|---|---|---|
| Oseltamivir (Tamiflu) | 75mg BID × 5 days PO | First-line for most patients. Safe in pregnancy. Adjust for renal impairment. |
| Zanamivir (Relenza) | 2 inhalations BID × 5 days (inhaled) | CONTRAINDICATED in asthma/COPD — risk of severe bronchospasm |
| Baloxavir marboxil (Xofluza) | Single oral dose (weight-based) | Alternative for uncomplicated flu in low-risk outpatients |
| IV peramivir | 600mg IV × 1 dose | For hospitalized patients who cannot take oral/inhaled medications |
| Drug | Mechanism/Duration | Board Key |
|---|---|---|
| Nirmatrelvir/ritonavir (Paxlovid) | Protease inhibitor + CYP3A4 inhibitor booster. 5 days PO. Start within 5 days of onset. | Multiple CYP3A4 drug interactions via ritonavir. ~85% reduction in hospitalization/death in high-risk. |
| Remdesivir | RNA polymerase inhibitor. 3 days IV (outpatient) or 5 days IV (hospitalized non-ventilated) | 3-day IV course for high-risk outpatients who cannot take oral medications |
| Molnupiravir | RNA polymerase inhibitor (mutagenic). 5 days PO. | Less effective than Paxlovid. CONTRAINDICATED in pregnancy — mutagenic potential. |
| Dexamethasone 6mg/day × ≤10d | Anti-inflammatory | ONLY for hospitalized patients requiring O₂ or ventilatory support (RECOVERY trial). AVOID in non-O₂-requiring outpatients. |
Ritonavir is a potent CYP3A4 inhibitor — dramatically increases levels of co-administered drugs:
| Drug Category | Examples | Action Required |
|---|---|---|
| CYP3A4-metabolized statins | Atorvastatin, simvastatin, lovastatin | HOLD during Paxlovid course — risk of myopathy/rhabdomyolysis. OK: rosuvastatin, pravastatin. |
| DOACs | Rivaroxaban, apixaban, warfarin | Dose adjustment or hold. Increase INR monitoring for warfarin. |
| Immunosuppressants | Tacrolimus, cyclosporine, sirolimus | Dramatic level increase → toxicity. Urgent dose reduction + level monitoring. |
| CYP3A4 inducers (reduce Paxlovid efficacy) | Carbamazepine, phenytoin, phenobarbital, rifampin | These LOWER Paxlovid levels → choose alternative antiviral |
| Cardiac drugs | Amiodarone, dronedarone, ranolazine | Avoid — risk of serious arrhythmias |
| Diagnosis | Rash Character | Key Distinguishing Feature | Cannot Miss |
|---|---|---|---|
| Rocky Mountain Spotted Fever (RMSF) | Blanching macules/papules → petechiae → purpura. Starts wrists/ankles → spreads centrally (centripetal). Palms and soles involved. | Tick exposure history (Dermacentor tick). Fever + rash on palms/soles = RMSF until proven otherwise. | Start doxycycline IMMEDIATELY — do NOT wait for confirmatory testing. Delay = death. Even in children. |
| Meningococcemia (N. meningitidis) | Petechial/purpuric rash — non-blanching. Rapid spread. May progress to purpura fulminans. | Abrupt onset high fever + meningismus + non-blanching petechiae = meningococcemia. College student, complement deficiency, asplenia are risk factors. | Blood cultures + IV ceftriaxone immediately. Rifampin prophylaxis for close contacts. Waterhouse-Friderichsen = bilateral adrenal hemorrhage. |
| Viral Exanthem (measles, rubella, EBV, enterovirus) | Maculopapular, erythematous, blanching. Spreads cephalocaudally (head to toe) in measles. | Koplik spots (white dots on buccal mucosa) = measles pathognomonic. EBV: posterior cervical lymphadenopathy + splenomegaly + atypical lymphocytes. | Amoxicillin rash in EBV is maculopapular, not urticarial — does NOT mean penicillin allergy. |
| Drug-Induced Exanthem / SJS / TEN | Maculopapular → urticarial. SJS: targetoid lesions + mucosal involvement + epidermal detachment <10% BSA. TEN: >30% BSA detachment. | Onset 1–3 weeks after starting new drug (allopurinol, sulfonamides, anticonvulsants, NSAIDs). Mucosal involvement = SJS/TEN not simple drug rash. | SJS/TEN: stop the offending drug immediately. Burn unit care. Steroids controversial. Mortality in TEN up to 30%. |
| Secondary Syphilis | Copper-colored maculopapular rash — characteristically involves palms and soles. Non-pruritic. | Diffuse rash + palms/soles + lymphadenopathy + condyloma lata + 4–10 weeks after primary chancre. RPR/VDRL positive. | Secondary syphilis rash is non-pruritic — if the rash itches, reconsider. Palm/sole involvement is the classic board clue. |
| Toxic Shock Syndrome (TSS) | Diffuse sunburn-like erythroderma. Desquamation of palms/soles occurs 1–2 weeks later. | Tampon use or wound infection + fever >38.9 + hypotension + diffuse sunburn rash + multi-organ involvement. S. aureus toxin (TSST-1) mediated. | Streptococcal TSS is more severe (higher mortality ~30–60%). Source control (remove tampon, debride wound) is critical. |
| Type | Opening Pressure | WBC (cells/μL) | Predominant Cell | Glucose | Protein | Key Feature |
|---|---|---|---|---|---|---|
| Bacterial | ↑↑ (>200) | >1000 (100–10,000) | Neutrophils (PMN) | ↓↓ (<45 mg/dL or <60% serum) | ↑↑ (>100 mg/dL) | Gram stain + culture. Empiric: ceftriaxone + vancomycin + dexamethasone ± ampicillin |
| Viral (Aseptic) | Normal or mildly ↑ | 10–500 (usually <300) | Lymphocytes | Normal (≥45) | Normal or mildly ↑ (<100) | Enteroviruses most common. HSV: lymphocytic pleocytosis + RBCs + temporal lobe changes. PCR diagnosis. |
| Fungal (Cryptococcus) | ↑↑↑ (often >300) | 5–100 (may be very low in immunosuppressed) | Lymphocytes | ↓ | ↑ | India ink positive (60–80%). Cryptococcal antigen (CSF + serum) >99% sensitivity. HIV + CD4 <100. |
| TB Meningitis | ↑ | 100–500 | Lymphocytes (early PMN possible) | ↓↓ (very low, can be <20) | ↑↑ (>100–500) | Basilar meningitis on MRI. AFB smear low sensitivity. ADA elevated. Treat empirically if suspected. |
| Lyme Meningitis | Normal or mildly ↑ | 10–200 | Lymphocytes | Normal | Mildly ↑ | Lymphocytic pleocytosis + Lyme serology (ELISA → Western blot). Treat with IV ceftriaxone × 14–28 days. |
| CD4 Count | OI Prophylaxis Threshold | Must-Consider Infections | Board Key |
|---|---|---|---|
| <500 | No specific prophylaxis; start ART | Bacterial pneumonia, TB reactivation, oral candidiasis, VZV reactivation | Start ART regardless of CD4 — U=U (undetectable = untransmittable) |
| <200 | PCP prophylaxis: TMP-SMX DS daily (/atovaquone/pentamidine) | Pneumocystis jirovecii (PCP) — bilateral GGO, dry cough, LDH elevated | PCP: TMP-SMX is treatment AND prophylaxis. Add prednisone if PaO₂ <70. |
| <100 | Toxoplasma prophylaxis: TMP-SMX DS covers both PCP and Toxo | Toxoplasmosis (multiple ring-enhancing lesions), Cryptococcal meningitis (India ink +, very high OP) | Single ring-enhancing lesion = lymphoma. Multiple = toxo. Empiric toxo treatment × 2 weeks; if no improvement → biopsy. |
| <50 | MAC prophylaxis: azithromycin weekly | CMV retinitis (floaters + visual loss + "pizza pie" fundus), MAC (fever + weight loss + night sweats + elevated ALP), Histoplasma | CMV retinitis: IV ganciclovir (or oral valganciclovir). Irreversible blindness if untreated — urgent ophthalmology. |
| Incubation | Mechanism | Organism | Key Feature | Treatment |
|---|---|---|---|---|
| 1–6 hours | Preformed toxin | S. aureus (staph toxin), B. cereus (emetic) | Rapid onset vomiting > diarrhea. Often after eating rice (B. cereus) or egg salad/deli meats (S. aureus). No fever. | Supportive only — toxin already formed, antibiotics useless |
| 8–16 hours | Preformed toxin | C. perfringens, B. cereus (diarrheal) | Diarrhea after beef stew, cafeteria food. Mild, self-limited <24h. | Supportive only |
| 1–3 days | Invasive / toxin-producing | Salmonella, Shigella, Campylobacter, ETEC, Vibrio | Fever + bloody diarrhea (Shigella, Campylobacter, Salmonella). ETEC = traveler's diarrhea (watery, no blood). Vibrio after raw oysters. | Shigella: azithromycin or fluoroquinolone. Campylobacter: azithromycin. Salmonella: usually self-limited; treat if immunocompromised or <3 months. |
| 3–5 days | Shiga toxin + invasive | STEC (E. coli O157:H7), EHEC | Bloody diarrhea + HUS (microangiopathic hemolytic anemia + thrombocytopenia + AKI). Children and elderly. | DO NOT give antibiotics — increases Shiga toxin release and HUS risk. Supportive care. No anti-motility agents. |
| Variable (post-antibiotic) | Toxin A+B mediated | C. difficile | Recent antibiotics + watery diarrhea ± pseudomembranes on colonoscopy. WBC >15K + Cr rise = severe. | Vancomycin PO or fidaxomicin. Stop offending antibiotic. Contact precautions. Soap and water (alcohol gel fails). |
| Antibiotic | Does NOT Cover | Board Trap Scenario |
|---|---|---|
| Cephalosporins (all generations) | Listeria monocytogenes, Enterococcus, MRSA (except ceftaroline) | Immunocompromised meningitis — add ampicillin for Listeria coverage |
| Nitrofurantoin | Systemic infection, pyelonephritis, bacteremia, Proteus, Klebsiella (variable) | Patient with pyelo started on nitrofurantoin — inadequate renal tissue levels |
| Azithromycin (macrolides) | MRSA, gram-negatives (except atypicals) | Gonorrhea treatment — azithromycin no longer recommended; ceftriaxone monotherapy per CDC 2021 |
| Metronidazole | Aerobic organisms, MRSA | Being added to aspiration pneumonia — increases mortality per IDSA 2019 without benefit |
| TMP-SMX | β-hemolytic Streptococci, Pseudomonas, Enterococcus | Non-purulent cellulitis — TMP-SMX targets MRSA but misses Strep; use cephalexin instead |
| Fluoroquinolones | MRSA (except some activity), Bacteroides, Enterococcus | Cipro for aspiration pneumonia — no anaerobic or atypical coverage in older formulations |
| Vancomycin | Gram-negative organisms, VRE (some strains), biofilm (needs higher levels) | VISA/VRSA: use linezolid or daptomycin |
| Antibiotic | Contraindicated In | Alternative |
|---|---|---|
| Doxycycline / Tetracyclines | Pregnancy (all trimesters), children <8 years | Azithromycin in pregnancy. Amoxicillin for Lyme in kids <8. Exception: no alternative for RMSF — doxycycline is used even in children <8 if RMSF suspected. |
| Fluoroquinolones | Children (theoretical cartilage damage), pregnancy (relative CI), myasthenia gravis (worsens NMJ block) | Beta-lactams for most pediatric/pregnancy infections. Avoid in MG. |
| Nitrofurantoin | Pyelonephritis, bacteremia, CrCl <30 (inadequate concentration), term pregnancy (>38 weeks — risk of neonatal hemolytic anemia) | Cephalexin or fosfomycin for UTI in pregnancy at term |
| Metronidazole | First trimester pregnancy (relative — teratogenicity concern); alcohol use during treatment | Topical metronidazole safer in first trimester. Avoid alcohol during and 48h after treatment. |
| Aminoglycosides | Pregnancy (ototoxicity/nephrotoxicity), CKD (nephrotoxic) | Use with caution, monitor levels. Avoid if possible in pregnancy. |